cymr.cmr.CMRParameters

class cymr.cmr.CMRParameters

Configuration of CMR model parameters.

fixed

Values of fixed parameters.

Type:

dict of (str: float)

free

Bounds of each free parameter.

Type:

dict of (str: tuple)

dependent

Expressions to define dependent parameters based the other parameters.

Type:

dict of (str: str)

dynamic

First dict specifies trial_type for dynamic parameters, second dict keys are parameter names, and values are expressions specifying how to update the parameter.

Type:

dict of (str: dict of (str: str))

sublayers

Names of sublayers for each layer in the network.

Type:

dict of (list of str)

weights

Weights template to set network connections. Weights are indicated by region within the network. Each region is specified with a tuple giving names of sublayers and segments: ((f_sublayer, f_segment), (c_sublayer, c_segment)). The value for each region should be an expression to be evaluated with patterns and/or parameters.

Type:

dict of (tuple of (tuple of str)): str

sublayer_param

Parameters that vary by sublayer. These parameters are specified in terms of their layer and sublayer. Each value should contain an expression to be evaluated with parameters.

Type:

dict of (str: dict of (str: dict of str))

__init__() → None

Methods

__init__()
copy()	Copy the parameters definition.
eval_dependent(param)	Evaluate dependent parameters based on input parameters.
eval_dynamic(param[, study, recall])	Evaluate dynamic parameters based on data fields.
eval_sublayer_param(layer, param[, n_trial, ...])	Evaluate sublayer parameters.
eval_weights(patterns[, param, item_index])	Evaluate weights based on parameters and patterns.
expand_param(param, names[, n_item, n_sub])	Expand parameters to a specified size.
get_dynamic(param, index)	Get list-specific parameters.
set_dependent(*args, **kwargs)	Set dependent parameters in terms of other parameters.
set_dynamic(trial_type, scope, *args, **kwargs)	Set dynamic parameters in terms of parameters and data.
set_fixed(*args, **kwargs)	Set fixed parameter values.
set_free(*args, **kwargs)	Set free parameter ranges.
set_options(*args, **kwargs)	Set model options.
set_sublayer_param(layer, sublayer, *args, ...)	Set sublayer parameters.
set_sublayers(*args, **kwargs)	Set layers and sublayers of a network.
set_weights(connect, regions)	Set weights on model patterns.
to_json(json_file)	Write parameter definitions to a JSON file.